PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00071.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 188aa    MW: 21550.8 Da    PI: 4.5356
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00071.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.63.6e-3431181128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrF Ptdeelvv++L+++++  +++  +vi+++d+y ++PwdLp k+ +e ++wyf+s++         ++r+t++gyW++ 
  Rsa1.0_00071.1_g00007.1   3 LPPGFRFFPTDEELVVHFLHRRASLLPCHP-DVIPDLDLYPYDPWDLPGKALGEGRQWYFYSRKT--------QERVTSNGYWESM 79 
                              79*************************999.99***************87778899*****9975........5799********* PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g d++v+++ ++++vg+kk L+fy g++    +t+Wvm+ey+l
  Rsa1.0_00071.1_g00007.1  80 GIDEPVFTSsTHKKVGIKKYLTFYLGDS----QTNWVMQEYSL 118
                              ******99867888**********7654....68*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-431156IPR003441NAC domain
PROSITE profilePS5100541.9223156IPR003441NAC domain
PfamPF023654.1E-224118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNLPPGFRFF PTDEELVVHF LHRRASLLPC HPDVIPDLDL YPYDPWDLPG KALGEGRQWY  60
FYSRKTQERV TSNGYWESMG IDEPVFTSST HKKVGIKKYL TFYLGDSQTN WVMQEYSLPD  120
SSSSAGRSSK RSSRGSTSSS HKPDYSKWVI CRVYEQNSSE EEDDDGAELS CLDEVFLSLD  180
DLDEVSLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-36116215171NAC domain-containing protein 19
4dul_A2e-36116215171NAC domain-containing protein 19
1ut7_B2e-36116215171NO APICAL MERISTEM PROTEIN
1ut7_A2e-36116215171NO APICAL MERISTEM PROTEIN
1ut4_B2e-36116215171NO APICAL MERISTEM PROTEIN
1ut4_A2e-36116215171NO APICAL MERISTEM PROTEIN
3swp_D2e-36116218174NAC domain-containing protein 19
3swp_C2e-36116218174NAC domain-containing protein 19
3swp_B2e-36116218174NAC domain-containing protein 19
3swp_A2e-36116218174NAC domain-containing protein 19
3swm_D2e-36116218174NAC domain-containing protein 19
3swm_C2e-36116218174NAC domain-containing protein 19
3swm_B2e-36116218174NAC domain-containing protein 19
3swm_A2e-36116218174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667460.0KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112137.11e-137PREDICTED: NAC transcription factor 25-like
RefseqXP_013661286.11e-137PREDICTED: NAC transcription factor 25-like
RefseqXP_013667295.11e-137PREDICTED: NAC transcription factor 25-like
SwissprotQ8GWK61e-117NC104_ARATH; NAC domain-containing protein 104
TrEMBLM4F9L61e-137M4F9L6_BRARP; Uncharacterized protein
TrEMBLA0A078G2331e-137A0A078G233_BRANA; BnaA09g06870D protein
STRINGBra037779.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-99xylem NAC domain 1